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Important Material:

  • GitHub Repository: Contains an example algorithm, JSON schemas for the individual data sources, and an extensive README to help you get started.
  • HANCOCK download page: Here you can download the training data for this challenge.

SubmissionΒΆ

The step-by-step submission is detailed in our GitHub Repository, where we also provide an example algorithm that you should modify with your solution. In the following, we assume that you have cloned this repository already and your local runs have been successful.

First, let us again check that everything is configured in the right way by running the container on our local device from the example-algorithm directory:

./do_test_run.sh

If you are happy with your output and the file is saved properly, let us now compress the container into an archive:

./do_save.sh

This will take some time. Once it is done, you should be rewarded with the following files: - example_algorithm-open-development-phase_{date-time}.tar.gz - nmodel.tar.gz

The first one is the actual algorithm, the second one is the content of your model directory.

Now let us take a look at the submission process on Grand Challenge:

  1. Open https://hancothon25.grand-challenge.org/
  2. Join the challenge
  3. (Optional): Create a Team (in the 'Teams' tab)

  4. Press the Submit tab and select your challenge (e.g., Open Development Phase Recurrence)

  5. Create a new algorithm

  6. Upload your example_algorithm-open-development-phase_{date-time}.tar.gz

  7. (Optional) Upload your compressed archive of the model directory

  8. (Optional) Try out your algorithm. Here, you can always select the first file available if you are only interested in the results. Otherwise, use the following list for searching for pk. 

{
  "HANCOCK TMA Tumor Center Core CD163 1": 3008760,
  "HANCOCK TMA Tumor Center Core CD163 2": 3008820,
  "HANCOCK TMA Tumor Center Core CD3 1": 3008752,
  "HANCOCK TMA Tumor Center Core CD3 2": 3008753,
  "HANCOCK TMA Tumor Center Core CD56 1": 3008756,
  "HANCOCK TMA Tumor Center Core CD56 2": 3008757,
  "HANCOCK TMA Tumor Center Core CD68 1": 3008758,
  "HANCOCK TMA Tumor Center Core CD68 2": 3008759,
  "HANCOCK TMA Tumor Center Core CD8 1": 3008754,
  "HANCOCK TMA Tumor Center Core CD8 2": 3008755,
  "HANCOCK TMA Tumor Center Core HE 1": 3008766,
  "HANCOCK TMA Tumor Center Core HE 2": 3008751,
  "HANCOCK TMA Tumor Center Core MHC-1 1": 3008796,
  "HANCOCK TMA Tumor Center Core MHC-1 2": 3008822,
  "HANCOCK TMA Tumor Center Core PD-L1 1": 3008819,
  "HANCOCK TMA Tumor Center Core PD-L1 2": 3008821,
  "HANCOCK Lymph Node WSI Embeddings": 3008765,
  "HANCOCK Primary Tumor WSI Embeddings": 3008762,
  "HANCOCK blood data": 3008761,
  "HANCOCK Clinical Data": 3008764,
  "HANCOCK Pathological Data": 3008763,
  "HANCOCK Surgery Text Data": 3008797,
}

Submit to the Open Development Phase. Go back to the challenge submission page and select your algorithm.